Summary

The discovery of differential gene–gene correlations across phenotypical groups can help identify the activation/deactivation of critical biological processes underlying specific conditions. The presented R package, provided with a count and design matrix, extract networks of group-specific interactions that can be interactively explored through a shiny user-friendly interface. For each gene–gene link, differential statistical significance is provided through robust linear regression with an interaction term.

Availability and implementation

DEGGs is implemented in R and available on GitHub at https://github.com/elisabettasciacca/DEGGs. The package is also under submission on Bioconductor.

© The Author(s) 2023. Published by Oxford University Press.
2023
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