Summary

CONCUR is a standalone tool for codon usage analysis in ribosome profiling experiments. CONCUR uses the aligned reads in BAM format to estimate codon counts at the ribosome E-, P- and A-sites and at flanking positions.

Availability and implementation

CONCUR is written in Perl and is freely available at https://github.com/susbo/concur.

Supplementary information

Supplementary data are available at Bioinformatics online.

© The Author(s) 2020. Published by Oxford University Press.
2020
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